Publications of Developmental Core Users

Akiyama MJ, Arnsten JH, Roth S. New normal: caring for hospitalised patients in the Bronx, New York, during COVID-19. Internal medicine journal. 2021;51(2):288-90. Epub 2021/02/26. doi: 10.1111/imj.15040. PubMed PMID: 33631859; PMCID: PMC8014146.
Akiyama MJ, Kronfli N, Cabezas J, Sheehan Y, Thurairajah PH, Lines R, Lloyd AR. Hepatitis C elimination among people incarcerated in prisons: challenges and recommendations for action within a health systems framework. The lancet Gastroenterology & hepatology. 2021;6(5):391-400. Epub 2021/04/16. doi: 10.1016/s2468-1253(20)30365-4. PubMed PMID: 33857445; PMCID: PMC8118192.
Akiyama MJ, Muller A, Huang O, Lizcano J, Nyakowa M, Riback L, Ross J, Bundi H, Kulabi ES, Mwangi AM, Musyoki H, Cherutich P, Kurth A. Hepatitis C-related knowledge, attitudes and perceived risk behaviours among people who inject drugs in Kenya: A qualitative study. Global public health. 2021:1-13. Epub 2021/03/11. doi: 10.1080/17441692.2021.1896763. PubMed PMID: 33689563.
Bachhuber MA, Nash D, Southern WN, Heo M, Berger M, Schepis M, Thakral M, Cunningham CO. Effect of Changing Electronic Health Record Opioid Analgesic Dispense Quantity Defaults on the Quantity Prescribed: A Cluster Randomized Clinical Trial. JAMA network open. 2021;4(4):e217481. Epub 2021/04/23. doi:10.1001/jamanetworkopen.2021.7481. PubMed PMID: 33885773; PMCID: PMC8063068 National Institutes of Health during the conduct of the study. Dr Heo reported receiving personal fees from HealthCorps. Dr Cunningham reported receiving grants from National Institute of Health during the conduct of the study. No other disclosures were reported.
Blackstock OJ, Platt J, Golub SA, Anakaraonye AR, Norton BL, Walters SM, Sevelius JM, Cunningham CO. A Pilot Study to Evaluate a Novel Pre-exposure Prophylaxis Peer Outreach and Navigation Intervention for Women at High Risk for HIV Infection. AIDS and behavior. 2021;25(5):1411-22. Epub 2020/08/05. doi: 10.1007/s10461-020-02979-y. PubMed PMID: 32748159..
Breton G, Mendoza P, Hägglöf T, Oliveira TY, Schaefer-Babajew D, Gaebler C, Turroja M, Hurley A, Caskey M, Nussenzweig MC. Persistent cellular immunity to SARS-CoV-2 infection. The Journal of experimental medicine. 2021;218(4). Epub 2021/02/04. doi: 10.1084/jem.20202515. PubMed PMID: 33533915; PMCID: PMC7845919 pending. No other disclosures were reported.
Carneiro PB, Westmoreland DA, Patel VV, Grov C. Awareness and Acceptability of Undetectable = Untransmittable Among a U.S. National Sample of HIV-Negative Sexual and Gender Minorities. AIDS and behavior. 2021;25(2):634-44. Epub 2020/09/09. doi: 10.1007/s10461-020-02990-3. PubMed PMID: 32897485; PMCID: PMC7854953.
Ceniceros AG, Shridhar N, Fazzari M, Felsen U, Fox AD. Low Use of Outpatient Parenteral Antimicrobial Therapy for Drug Use-Associated Infective Endocarditis in an Urban Hospital System. Open forum infectious diseases. 2021;8(3):ofab083. Epub 2021/04/03. doi: 10.1093/ofid/ofab083. PubMed PMID: 33796596; PMCID: PMC7990064.
Chyten-Brennan J, Patel VV, Ginsberg MS, Hanna DB. Algorithm to identify transgender and gender nonbinary individuals among people living with HIV performs differently by age and ethnicity. Annals of epidemiology. 2021;54:73-8. Epub 2020/10/04. doi: 10.1016/j.annepidem.2020.09.013. PubMed PMID: 33010416; PMCID: PMC7883669.
Ehinger E, Ghosheh Y, Pramod AB, Lin J, Hanna DB, Mueller K, Durant CP, Baas L, Qi Q, Wang T, Buscher K, Anastos K, Lazar JM, Mack WJ, Tien PC, Cohen MH, Ofotokun I, Gange S, Heath SL, Hodis HN, Tracy RP, Landay AL, Kaplan RC, Ley K. Classical monocyte transcriptomes reveal significant anti-inflammatory statin effect in women with chronic HIV. Cardiovascular research. 2021;117(4):1166-77. Epub 2020/07/14. doi: 10.1093/cvr/cvaa188. PubMed PMID: 32658258; PMCID: PMC7983000.
El-Bassel N, Gilbert L, Hunt T, Wu E, Oga EA, Mukherjee TI, Campbell ANC, Sabounchi N, Gutnick D, Kerner R, Venner KL, Lounsbury D, Huang TTK, Rapkin B. Using community engagement to implement evidence-based practices for opioid use disorder: A data-driven paradigm & systems science approach. Drug and alcohol dependence. 2021;222:108675. Epub 2021/03/25. doi: 10.1016/j.drugalcdep.2021.108675. PubMed PMID: 33757707; PMCID: PMC8058324.
El-Far M, Durand M, Turcotte I, Larouche-Anctil E, Sylla M, Zaidan S, Chartrand-Lefebvre C, Bunet R, Ramani H, Sadouni M, Boldeanu I, Chamberland A, Lesage S, Baril JG, Trottier B, Thomas R, Gonzalez E, Filali-Mouhim A, Goulet JP, Martinson JA, Kassaye S, Karim R, Kizer JR, French AL, Gange SJ, Ancuta P, Routy JP, Hanna DB, Kaplan RC, Chomont N, Landay AL, Tremblay CL. Upregulated IL-32 Expression And Reduced Gut Short Chain Fatty Acid Caproic Acid in People Living With HIV With Subclinical Atherosclerosis. Frontiers in immunology. 2021;12:664371. Epub 2021/05/04. doi: 10.3389/fimmu.2021.664371. PubMed PMID: 33936102; PMCID: PMC8083984.
Felsen UR, Tlamsa A, Moir L, Shukla S, Thompson D, Weiss JM, Heo M, Litwin AH. Comparing Routine HIV and Hepatitis C Virus Screening to Estimate the Effect of Required Consent on HIV Screening Rates Among Hospitalized Patients. Public health reports (Washington, DC : 1974). 2021:33354921999170. Epub 2021/03/07. doi: 10.1177/0033354921999170. PubMed PMID: 33673778.
Gaebler C, Falcinelli SD, Stoffel E, Read J, Murtagh R, Oliveira TY, Ramos V, Lorenzi JCC, Kirchherr J, James KS, Allard B, Baker C, Kuruc JD, Caskey M, Archin NM, Siliciano RF, Margolis DM, Nussenzweig MC. Sequence Evaluation and Comparative Analysis of Novel Assays for Intact Proviral HIV-1 DNA. Journal of virology. 2021;95(6). Epub 2020/12/29. doi: 10.1128/jvi.01986-20. PubMed PMID: 33361426; PMCID: PMC8094944.
Gaebler C, Wang Z, Lorenzi JCC, Muecksch F, Finkin S, Tokuyama M, Cho A, Jankovic M, Schaefer-Babajew D, Oliveira TY, Cipolla M, Viant C, Barnes CO, Bram Y, Breton G, Hägglöf T, Mendoza P, Hurley A, Turroja M, Gordon K, Millard KG, Ramos V, Schmidt F, Weisblum Y, Jha D, Tankelevich M, Martinez-Delgado G, Yee J, Patel R, Dizon J, Unson-O'Brien C, Shimeliovich I, Robbiani DF, Zhao Z, Gazumyan A, Schwartz RE, Hatziioannou T, Bjorkman PJ, Mehandru S, Bieniasz PD, Caskey M, Nussenzweig MC. Evolution of antibody immunity to SARS-CoV-2. Nature. 2021;591(7851):639-44. Epub 2021/01/19. doi: 10.1038/s41586-021-03207-w. PubMed PMID: 33461210.
Gondim MVP, Sherrill-Mix S, Bibollet-Ruche F, Russell RM, Trimboli S, Smith AG, Li Y, Liu W, Avitto AN, DeVoto JC, Connell J, Fenton-May AE, Pellegrino P, Williams I, Papasavvas E, Lorenzi JCC, Salantes DB, Mampe F, Monroy MA, Cohen YZ, Heath S, Saag MS, Montaner LJ, Collman RG, Siliciano JM, Siliciano RF, Plenderleith LJ, Sharp PM, Caskey M, Nussenzweig MC, Shaw GM, Borrow P, Bar KJ, Hahn BH. Heightened resistance to host type 1 interferons characterizes HIV-1 at transmission and after antiretroviral therapy interruption. Science translational medicine. 2021;13(576). Epub 2021/01/15. doi: 10.1126/scitranslmed.abd8179. PubMed PMID: 33441429; PMCID: PMC7923595.
Grov C, Westmoreland DA, D'Angelo AB, Johnson J, Nash D, Daskalakis DC. Marketing of Tenofovir Disoproxil Fumarate (TDF) Lawsuits and Social Media Misinformation Campaigns' Impact on PrEP Uptake Among Gender and Sexual Minority Individuals. AIDS and behavior. 2021;25(5):1396-404. Epub 2020/07/31. doi: 10.1007/s10461-020-02977-0. PubMed PMID: 32729019; PMCID: PMC7854969.
Hacisuleyman E, Hale C, Saito Y, Blachere NE, Bergh M, Conlon EG, Schaefer-Babajew DJ, DaSilva J, Muecksch F, Gaebler C, Lifton R, Nussenzweig MC, Hatziioannou T, Bieniasz PD, Darnell RB. Vaccine Breakthrough Infections with SARS-CoV-2 Variants. The New England journal of medicine. 2021. Epub 2021/04/22. doi: 10.1056/NEJMoa2105000. PubMed PMID: 33882219; PMCID: PMC8117968.
Heo M, Pericot-Valverde I, Rennert L, Akiyama MJ, Norton BL, Gormley M, Agyemang L, Arnsten JH, Litwin AH. Hepatitis C virus DAA treatment adherence patterns and SVR among people who inject drugs treated in opioid agonist therapy programs. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2021. Epub 2021/04/21. doi: 10.1093/cid/ciab334. PubMed PMID: 33876230.
LeCroy MN, Kim RS, Stevens J, Hanna DB, Isasi CR. Identifying Key Determinants of Childhood Obesity: A Narrative Review of Machine Learning Studies. Childhood obesity (Print). 2021;17(3):153-9. Epub 2021/03/05. doi: 10.1089/chi.2020.0324. PubMed PMID: 33661719.
Mehrotra ML, Westmoreland DA, Patel VV, Hojilla JC, Grov C. Breaking Inertia: Movement Along the PrEP Cascade in a Longitudinal US National Cohort of Sexual Minority Individuals at Risk for HIV. Journal of acquired immune deficiency syndromes (1999). 2021;86(5):e118-e25. Epub 2021/03/05. doi: 10.1097/qai.0000000000002611. PubMed PMID: 33661823; PMCID: PMC7942983.
Munyaneza A, Adedimeji A, Kim HY, Shi Q, Hoover DR, Ross J, Murchison L, Murenzi G, Kabahizi J, Gasana J, Nsengiyumva B, Kubwimana G, Kanyabwisha F, Muhoza B, Ingabire C, Mutesa L, Castle PE, Palefsky JM, Anastos K, Patel VV. Awareness and Willingness to Use HIV Pre-exposure Prophylaxis Among Men Who Have Sex With Men in Rwanda: A Cross-Sectional Descriptive Survey. The Journal of the Association of Nurses in AIDS Care : JANAC. 2021. Epub 2021/01/16. doi: 10.1097/jnc.0000000000000228. PubMed PMID: 33449579.
Norton BL, Akiyama MJ, Arnsten JH, Agyemang L, Heo M, Litwin AH. High HCV cure rates among people who inject drugs and have suboptimal adherence: A patient-centered approach to HCV models of care. The International journal on drug policy. 2021;93:103135. Epub 2021/03/06. doi: 10.1016/j.drugpo.2021.103135. PubMed PMID: 33667826.
Patel VV, Felsen UR, Fisher M, Fazzari MJ, Ginsberg MS, Beil R, Akiyama MJ, Anastos K, Hanna DB. Clinical Outcomes and Inflammatory Markers by HIV Serostatus and Viral Suppression in a Large Cohort of Patients Hospitalized With COVID-19. Journal of acquired immune deficiency syndromes (1999). 2021;86(2):224-30. Epub 2021/01/13. doi:
Pericot-Valverde I, Rennert L, Heo M, Akiyama MJ, Norton BL, Agyemang L, Lumsden B, Litwin AH. Rates of perfect self-reported adherence to direct-acting antiviral therapy and its correlates among people who inject drugs on medications for opioid use disorder: The PREVAIL study. Journal of viral hepatitis. 2021;28(3):548-57. Epub 2020/11/30. doi: 10.1111/jvh.13445. PubMed PMID: 33249689.
Peters BA, Sheira LA, Hanna DB, Qi Q, Sharma A, Adedimeji A, Wilson T, Merenstein D, Tien PC, Cohen M, Wentz EL, Kinslow J, Landay AL, Weiser SD. Food Insecurity and T-cell Dysregulation in Women Living With Human Immunodeficiency Virus on Antiretroviral Therapy. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2021;72(5):e112-e9. Epub 2020/11/29. doi: 10.1093/cid/ciaa1771. PubMed PMID: 33247896; PMCID: PMC7935377.
Racine-Brzostek SE, Karbaschi M,Gaebler C, Klasse PJ, Yee J, Caskey M, Yang HS, Hao Y, Sukhu A, Rand S, Chadburn A, Shi Y, Zuk R, Nussenzweig MC, Cushing MM, Zhao Z. TOP-Plus is a Versatile Biosensor Platform for Monitoring SARS-CoV-2 Antibody Durability. Clinical chemistry. 2021. Epub 2021/04/30. doi: 10.1093/clinchem/hvab069. PubMed PMID: 33914041.
Ross J, Ingabire C, Umwiza F, Gasana J, Munyaneza A, Murenzi G, Nsanzimana S, Remera E, Akiyama MJ, Anastos KM, Adedimeji A. How early is too early? Challenges in ART initiation and engaging in HIV care under Treat All in Rwanda-A qualitative study. PloS one. 2021;16(5):e0251645. Epub 2021/05/14. doi: 10.1371/journal.pone.0251645. PubMed PMID: 33984044.
Ross J, Murenzi G, Hill S, Remera E, Ingabire C, Umwiza F, Munyaneza A, Muhoza B, Habimana DS, Mugwaneza P, Zhang C, Yotebieng M, Anastos K. Reducing time to differentiated service delivery for newly diagnosed people living with HIV in Kigali, Rwanda: study protocol for a pilot, unblinded, randomised controlled study. BMJ open. 2021;11(4):e047443. Epub 2021/04/26. doi: 10.1136/bmjopen-2020-047443. PubMed PMID: 33895720; PMCID: PMC8074553.
Shitole SG, Lazar JM, Hanna DB, Kim RS, Anastos K, Garcia MJ, Tien PC, Lima JAC, Kaplan RC, Kizer JR. HIV, HCV and risk of new-onset left ventricular dysfunction: the women's interagency HIV study. AIDS (London, England). 2021. Epub 2021/04/17. doi: 10.1097/qad.0000000000002920. PubMed PMID: 33859109.
Sultan JS, Wang T, Hunte R, Srinivasan S, McWalters J, Tharp GK, Bosinger SE, Fiedler TL, Atrio JM, Murphy K, Barnett R, Ray LR, Krows ML, Fredricks DN, Irungu E, Ngure K, Mugo N, Marrazzo J, Keller MJ, Herold BC. Differences in vaginal microbiota, host transcriptome and proteins in women with bacterial vaginosis are associated with metronidazole treatment response. The Journal of infectious diseases. 2021. Epub 2021/05/19. doi: 10.1093/infdis/jiab266. PubMed PMID: 34003290.
Valente PK, Wu Y, Cohen YZ, Caskey M, Meyers K. Behavioral and social science research to support development of educational materials for clinical trials of broadly neutralizing antibodies for HIV treatment and prevention. Clinical trials (London, England). 2021;18(1):17-27. Epub 2020/08/26. doi: 10.1177/1740774520948042. PubMed PMID: 32838558; PMCID: PMC7878274.
Viant C, Escolano A, Chen ST, Nussenzweig MC. Sequencing, cloning, and antigen binding analysis of monoclonal antibodies isolated from single mouse B cells. STAR protocols. 2021;2(2):100389. Epub 2021/03/30. doi: 10.1016/j.xpro.2021.100389. PubMed PMID: 33778783; PMCID: PMC7985702.
Wang Z, Lorenzi JCC, Muecksch F, Finkin S, Viant C, Gaebler C, Cipolla M, Hoffmann HH, Oliveira TY, Oren DA, Ramos V, Nogueira L, Michailidis E, Robbiani DF, Gazumyan A, Rice CM, Hatziioannou T, Bieniasz PD, Caskey M, Nussenzweig MC. Enhanced SARS-CoV-2 neutralization by dimeric IgA. Science translational medicine. 2021;13(577). Epub 2020/12/09. doi: 10.1126/scitranslmed.abf1555. PubMed PMID: 33288661; PMCID: PMC7857415.
Wang Z, Schmidt F, Weisblum Y, Muecksch F, Barnes CO, Finkin S, Schaefer-Babajew D, Cipolla M, Gaebler C, Lieberman JA, Oliveira TY, Yang Z, Abernathy ME, Huey-Tubman KE, Hurley A, Turroja M, West KA, Gordon K, Millard KG, Ramos V, Da Silva J, Xu J, Colbert RA, Patel R, Dizon J, Unson-O'Brien C, Shimeliovich I, Gazumyan A, Caskey M, Bjorkman PJ, Casellas R, Hatziioannou T, Bieniasz PD, Nussenzweig MC. mRNA vaccine-elicited antibodies to SARS-CoV-2 and circulating variants. Nature. 2021;592(7855):616-22. Epub 2021/02/11. doi: 10.1038/s41586-021-03324-6. PubMed PMID: 33567448.
Westmoreland DA, Carrico AW, Goodwin RD, Pantalone DW, Nash D, Grov C. Higher and Higher? Drug and Alcohol Use and Misuse among HIV-Vulnerable Men, Trans Men, and Trans Women Who Have Sex with Men in the United States. Substance use & misuse. 2021;56(1):111-22. Epub 2020/11/07. doi: 10.1080/10826084.2020.1843057. PubMed PMID: 33153358.
Yoon HA, Bartash R, Gendlina I, Rivera J, Nakouzi A, Bortz RH, 3rd, Wirchnianski AS, Paroder M, Fehn K, Serrano-Rahman L, Babb R, Sarwar UN, Haslwanter D, Laudermilch E, Florez C, Dieterle ME, Jangra RK, Fels JM, Tong K, Mariano MC, Vergnolle O, Georgiev GI, Herrera NG, Malonis RJ, Quiroz JA, Morano NC, Krause GJ, Sweeney JM, Cowman K, Allen S, Annam J, Applebaum A, Barboto D, Khokhar A, Lally BJ, Lee A, Lee M, Malaviya A, Sample R, Yang XA, Li Y, Ruiz R, Thota R, Barnhill J, Goldstein DY, Uehlinger J, Garforth SJ, Almo SC, Lai JR, Gil MR, Fox AS, Chandran K, Wang T, Daily JP, Pirofski LA. Treatment of severe COVID-19 with convalescent plasma in Bronx, NYC. JCI insight. 2021;6(4). Epub 2021/01/22. doi: 10.1172/jci.insight.142270. PubMed PMID: 33476300; PMCID: PMC7934933.
Yoon HA, Riska PF, Jain R, Morales C, Pirofski LA. Unexpected case of cryptococcal meningoencephalitis in a patient with long-standing well-controlled HIV infection. Medical mycology case reports. 2021;32:14-6. Epub 2021/02/09. doi: 10.1016/j.mmcr.2021.01.003. PubMed PMID: 33552883; PMCID: PMC7851412.
Zarwell M, John SA, Mirzayi C, Pantalone DW, Golub S, Nash D, Grov C. PrEP Uptake and Discontinuation Among a U.S. National Sample of Transgender Men and Women. AIDS and behavior. 2021;25(4):1063-71. Epub 2020/10/16. doi: 10.1007/s10461-020-03064-0. PubMed PMID: 33057893; PMCID: PMC7979462.
Zhang E, Chai JC, Deik AA, Hua S, Sharma A, Schneider MF, Gustafson D, Hanna DB, Lake JE, Rubin LH, Post WS, Anastos K, Brown T, Clish CB, Kaplan RC, Qi Q. Plasma Lipidomic Profiles and Risk of Diabetes: 2 Prospective Cohorts of HIV-Infected and HIV-Uninfected Individuals. The Journal of clinical endocrinology and metabolism. 2021;106(4):999-1010. Epub 2021/01/10. doi: 10.1210/clinem/dgab011. PubMed PMID: 33420793; PMCID: PMC7993589.

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Publications of Developmental Core Users