Kelly Stanton, Fabio Parisi, Francesco Strino, Neta Rabin, Patrik Asp and Yuval Kluger. Arpeggio: harmonic compression of ChIP-seq data reveals protein-chromatin interaction signatures. Nucleic Acids Research 2013, Sept 1;41:e161
Patrice Nancy, Elisa Tagliani, Chin-Siean Tay, Patrik Asp, David E. Levy and Adrian Erlebacher. Chemokine gene silencing in decidual stromal cells limits T cell access to the maternal-fetal interface. Science 2012, Jun 8;336(6086): 1317-21.
Micsinai, Mariann; Parisi, Fabio; Strino, Francesco; Asp, Patrik; Dynlacht, Brian; Kluger, Yuval. Picking ChIP-Seq Peak Detectors for Analyzing Chromatin Modification Experiments. Nucleic Acids Res 2012, May;40(9): e70.
Panagiotis Ntziachristos, Aristotelis Tsirigos, Pieter Van Vlierberghe, Jelena Nedjic, Thomas Trimarchi, Maria Sol Flaherty, Dolors Ferres-Marco, Vanina da Ros, Zuojian Tang, Jasmin Siegle, Patrik Asp, Michael Hadler, Isaura Rigo, Kim De Keersmaecker, Jay Patel, Tien Huynh, Filippo Utro, Sandrine Poglio, Jeremy B Samon, Elisabeth Paietta, Janis Racevskis, Jacob M Rowe, Raul Rabadan, Ross L Levine, Stuart Brown, Francoise Pflumio, Maria Dominguez, Adolfo Ferrando & Iannis Aifantis. Genetic inactivation of the polycomb repressive complex 2 in T cell acute lymphoblastic leukemia. Nat Med 2012, Feb 6 ;18(2):298-301.
Asp P, Blum R, Vethantham V, Parisi F, Micsiani M, Cheng J, Bowman C, Kluger Y, Dynlacht BD. Genome-wide remodeling of the epigenetic landscape during myogenic differentiation. Proc Natl Acad Sci U S A, 2011 108(22): E149-158.
Patrik Asp, Diego Acosta-Alvear, Mary Tsikitis, Chris van Oevelen and Brian David Dynlacht (2009) E2f3b plays an essential role in myogenic differentiation through isoform specific gene regulation. Genes Dev 2009. 23:37-53.
Van Oevelen C, Wang J, Asp P, Yan Q, Kaelin WG Jr, Kluger Y, Dynlacht BD. (2008) A role for mammalian Sin3 in permanent gene silencing. Mol Cell. 2008 Nov 7;32 (3):359-70.
Erica Cavellán, Patrik Asp, Piergiorgio Percipalle and Ann-Kristin Östlund-Farrants (2006)The WSTF-SNF2h chromatin remodeling complex interacts with several nuclear proteins in transcription. J Biol Chem. 2006 Jun 16;281(24):16264-71.