Eric E. Bouhassira
<p>Dr. Eric E. Bouhassira joined the Albert Einstein College of Medicine in 1990. He began studying human embryonic stem cells in 2001. He is director of the medical school's Center for Human Embryonic Stem Cell Research and professor of medicine and of cell biology. Dr. Bouhassira's research focuses on developing hematopoietic (blood forming) stem cells that can differentiate into red blood cells, T cells, platelets, and all other cell types that comprise blood. This work could potentially aid patients needing transfusions and also save lives by expanding the immunology diversity of hematopoietic stem cells available for transplant. Dr. Bouhassira is also interested in epigentic regulation in the erythoid and hematopoeitic lineag with a focus on DNA replication and DNA methylation. Dr. Bouhassira received his B.S., M.S., and Ph.D. degrees from the Université Pierre et Marie Curie in Paris, France. Dr. Bouhassira also holds the Ingeborg and Ira Rennert Chair in Stem Cell Biology and Regenerative Medicine.</p>
<p><strong>Current Clinical Protocols</strong></p>
<ol>
<li>In vitro red blood cell production</li>
<li>Feasibility pilot study of therapies for sickle cell disease and Thalassemia</li>
<li>Quartet sequencing and genome phasing</li>
</ol>
<p class="MsoNormal" style="line-height: 15.6pt;">Dr. Bouhassira’s work focuses on prompting human embryonic stem cells to develop into hematopoietic (blood-forming), as well as stem cells, and into red blood cells. This work could potentially help patients needing transfusions and save lives by expanding the production of customized cells that could be transplanted without risk of rejection. The cells produced by Dr. Bouhassira can also be used to deliver therapeutic proteins to the circulatory system. </p>
<p class="MsoNormal" style="line-height: 15.6pt;">Dr. Bouhassira’s research also aims to find cures for sickle cell disease by developing novel gene therapy strategies.</p>
<p class="MsoNormal"><strong style="mso-bidi-font-weight: normal;"> </strong> <strong><span style="font-family: Arial, sans-serif;">Complete bibliography:</span></strong> <span style="background-image: initial; background-position: initial; background-size: initial; background-repeat: initial; background-attachment: initial; background-origin: initial; background-clip: initial; font-size: 11.5pt; font-family: Helvetica, sans-serif; color: #212121;"> </span><a href="https://www.ncbi.nlm.nih.gov/myncbi/14gVia2i54M5O/bibliography/public/"… style="font-size: 11.5pt; font-family: Helvetica, sans-serif; color: #4c2c92; background-image: initial; background-position: initial; background-size: initial; background-repeat: initial; background-attachment: initial; background-origin: initial; background-clip: initial;">https://www.ncbi.nlm.nih.gov/myncbi/14gVia2i54M5O/bibliography/public/<…;
<p class="MsoNormal" style="text-indent: .25in;"><strong style="mso-bidi-font-weight: normal;"><span style="background: lightgrey; mso-highlight: lightgrey;">Research areas:</span></strong></p>
<p class="MsoNormal" style="text-indent: .25in;"><strong style="mso-bidi-font-weight: normal;"><span style="background: lightgrey; mso-highlight: lightgrey;">Development of methods to produce cultured red blood cells from hematopoietic stem cells and from pluripotent stem cells.</span></strong></p>
<p class="MsoNormal"><span style="text-align: justify; text-indent: 0.25in;">Progress in cell culture methods has open up the possibility of manufacturing red blood cells (RBCs) for transfusion. We have developed methods to produce large number of red blood cells from hematopoietic stem cells and from pluripotent stem cells. Using detailed analysis of globin chain expression, we were the first to demonstrate that differentiation of hESCs and iPSCs into erythroid cells faithfully recapitulates the embryonic and fetal stages of human erythropoiesis but do not yield red blood cells with an adult phenotype. We also demonstrated that fetal stage erythroid cells derived from pluripotent cells can enucleate </span><em style="text-align: justify; text-indent: 0.25in;">in vitro</em><span style="text-align: justify; text-indent: 0.25in;">.</span>Since these early studies, observations that cells produced from pluripotent cells are developmentally immature have been made in many other lineages, by others. Finding methods to produce developmentally mature cells from pluripotent stem cells has become a central focus of many labs including my own. We recently obtained NIH funding to apply our advanced culture methods and translate our results into a commercial product by developing a panel of IPSC lines from patients carrying very rare blood groups that can be used as universal donor for transfusion and as reagent RBCs that will be used to type antibodies in allo-immunized patients with sickle cell disease.</p>
<p class="MsoListParagraph" style="margin-left: .25in; text-align: justify; text-indent: -.25in; mso-list: l5 level1 lfo5;"><!-- [if !supportLists]--><span style="mso-bidi-font-size: 11.0pt; mso-fareast-font-family: Arial; mso-bidi-font-family: Arial;"><span style="mso-list: Ignore;">1.<span style="font: 7.0pt 'Times New Roman';"> </span></span></span><!--[endif]--><span lang="FR" style="mso-bidi-font-family: Arial; mso-ansi-language: FR;">Olivier EN, Qiu C, Velho M, Hirsch RE, Bouhassira EE. </span><strong style="mso-bidi-font-weight: normal;"><span style="mso-bidi-font-family: Arial;">Large-scale production of embryonic red blood cells from human embryonic stem cells.</span></strong> <span style="mso-bidi-font-size: 11.0pt; mso-bidi-font-family: Arial;">Exp Hematol. 2006 Dec;34(12):1635-42.</span> <span style="mso-bidi-font-size: 11.0pt; mso-bidi-font-family: Arial;">PMID: 17157159 <u>Cited by 161</u></span> </p>
<p class="MsoListParagraph" style="margin-left: .25in; text-align: justify; text-indent: -.25in; mso-list: l5 level1 lfo5;"><!-- [if !supportLists]--><span style="mso-fareast-font-family: Arial; mso-bidi-font-family: Arial;"><span style="mso-list: Ignore;">2.<span style="font: 7.0pt 'Times New Roman';"> </span></span></span><!--[endif]--><span lang="FR" style="mso-ansi-language: FR;">Qiu C, Olivier EN, Velho M, Bouhassira EE. </span><strong style="mso-bidi-font-weight: normal;">Globin switches in yolk sac primitive and fetal definitive RBCs produced from human embryonic stem cells</strong>. Blood. 2008; 111(4):2400-8. PMID: 18024790 <u>Cited by 154</u></p>
<p class="MsoListParagraph" style="margin-left: .25in; text-align: justify; text-indent: -.25in; mso-list: l5 level1 lfo5;"><!-- [if !supportLists]--><span style="mso-bidi-font-size: 9.0pt; mso-fareast-font-family: Arial; mso-bidi-font-family: Arial;"><span style="mso-list: Ignore;">3.<span style="font: 7.0pt 'Times New Roman';"> </span></span></span><!--[endif]-->Wang K, Guzman AK, Yan Z, Zhang S, Hu MY, Hamaneh MB, Yu YK, Tolu S, Zhang J, Kanavy HE, Ye K, Bartholdy B, Bouhassira EE. <strong style="mso-bidi-font-weight: normal;">Ultra-High-Frequency Reprogramming of Individual Long-Term Hematopoietic Stem Cells Yields Low Somatic Variant Induced Pluripotent Stem Cells.</strong> <span style="mso-bidi-font-size: 9.0pt;">Cell Rep. 2019 Mar 5;26(10):2580-2592.e7<span style="mso-spacerun: yes;"> </span>PMID: 30840883 <u>Cited by 2</u></span></p>
<p class="MsoListParagraph" style="margin-left: .25in; text-align: justify; text-indent: -.25in; mso-list: l5 level1 lfo5;"><!-- [if !supportLists]--><span style="mso-bidi-font-size: 11.0pt; mso-fareast-font-family: Arial; mso-bidi-font-family: Arial;"><span style="mso-list: Ignore;">4.<span style="font: 7.0pt 'Times New Roman';"> </span></span></span><!--[endif]-->Olivier EN, Zhang S, Yan Z, Suzuka S, Roberts K, Wang K, Bouhassira EE. <strong style="mso-bidi-font-weight: normal;">RED, an Albumin-Free Robust Erythroid Differentiation Method to Produce Enucleated Red Blood Cells from Human Pluripotent and Adult Stem Cells. </strong><span style="mso-bidi-font-size: 11.0pt;">Exp Hematol. 2019 Jul;75:31-52.e15 </span><span style="mso-bidi-font-size: 11.0pt; font-family: 'Helvetica',sans-serif; mso-bidi-font-family: 'Times New Roman'; color: #212121; background: white;">PMID: 31176681</span></p>
<p class="MsoListParagraph" style="margin-left: .25in; text-align: justify; text-indent: -.25in; mso-list: l5 level1 lfo5;"><!-- [if !supportLists]--><span style="font-size: 9.0pt; mso-fareast-font-family: Arial; mso-bidi-font-family: Arial;"><span style="mso-list: Ignore;">5.<span style="font: 7.0pt 'Times New Roman';"> </span></span></span><!--[endif]--><span lang="FR" style="mso-ansi-language: FR;">Olivier EN, Wang K, Grossman J, Mahmud N, Bouhassira EE. </span><strong style="mso-bidi-font-weight: normal;">Differentiation of Baboon (Papio anubis) Induced-Pluripotent Stem Cells into Enucleated Red Blood Cells.</strong> <span style="font-size: 9.0pt;">Cells. 2019 Oct 19;8(10).PMID: 31635069.</span></p>
<p class="MsoListParagraph" style="margin-left: .25in; text-align: justify; text-indent: -.25in; mso-list: l5 level1 lfo5;"><!-- [if !supportLists]--><strong style="mso-bidi-font-weight: normal;"><span style="background: lightgrey; mso-highlight: lightgrey;">Gene therapy for the hemoglobinopathies</span></strong></p>
<p class="MsoListParagraph" style="text-autospace: ideograph-numeric ideograph-other;"><strong style="mso-bidi-font-weight: normal;"> </strong><span style="text-align: justify; text-indent: 0.25in;">Lentiviral based gene therapy for the hemoglobinopathies is coming of age. We have contributed to the field by studying at the basic science level the major causes of transgene silencing in erythroid cells. Using the RMCE method we have demonstrated that in eukaryotic cells, silencing is not primarily caused by integration near heterochromatin but rather by transcriptional interferences between the transgenes and neighboring sequences. By studying cassettes that were either devoid of any CpG dinucleotides, or that were pre-methylated prior to integration, we were able to demonstrate that DNA methylation is not necessary for silencing but that it confers an epigenetic memory.</span></p>
<p class="MsoNormal" style="text-align: justify; text-indent: .25in; text-autospace: ideograph-numeric ideograph-other;">We also demonstrated that inclusion of insulators in gene therapy cassettes was a double edged sword since these elements can prevent silencing and insertional mutagenesis at some genetic loci, but can also cause silencing and insertional mutagenesis at other locations. Some of these basic science findings were applied to design the gene therapy cassettes that were used, in collaboration with the Leboulch lab, to provide the first proof of principle in mice that gene therapy could be used to cure sickle cell disease. These vectors are currently tested by BlueBird therapeutics in human clinical trials that have had encouraging results.</p>
<p class="MsoNormal" style="margin-left: 13.5pt; text-indent: -.25in; mso-list: l4 level1 lfo1; mso-layout-grid-align: none; text-autospace: ideograph-numeric ideograph-other;"><!-- [if !supportLists]--><span style="mso-bidi-font-size: 11.0pt; mso-fareast-font-family: Arial; mso-bidi-font-family: Arial;"><span style="mso-list: Ignore;">1.<span style="font: 7.0pt 'Times New Roman';"> </span></span></span><!--[endif]--><span style="mso-bidi-font-family: Arial;">Feng YQ, Warin R, Li T, Olivier E, Besse A, Lobell A, Fu H, Lin CM, Aladjem MI, Bouhassira EE. (2005): <strong style="mso-bidi-font-weight: normal;">The Human </strong></span><strong style="mso-bidi-font-weight: normal;"><span style="font-family: Symbol; mso-bidi-font-family: Arial;">b</span></strong><strong style="mso-bidi-font-weight: normal;"><span style="mso-bidi-font-family: Arial;">-Globin Locus Control Region Can Silence as Well as Activate Gene Expression</span></strong><span style="mso-bidi-font-family: Arial;">. </span><span style="mso-bidi-font-size: 11.0pt; mso-bidi-font-family: Arial;">Mol Cell Biol.25: (10):3864-74.</span> <span style="mso-bidi-font-size: 11.0pt; mso-bidi-font-family: Arial;">PMID: 15870261 <u>Cited by 44</u></span></p>
<p class="MsoNormal" style="margin-left: 13.5pt; text-indent: -.25in; mso-list: l4 level1 lfo1; mso-layout-grid-align: none; text-autospace: ideograph-numeric ideograph-other;"><!-- [if !supportLists]--><span style="mso-bidi-font-size: 11.0pt; mso-fareast-font-family: Arial; mso-bidi-font-family: Arial;"><span style="mso-list: Ignore;">2.<span style="font: 7.0pt 'Times New Roman';"> </span></span></span><!--[endif]--><span style="mso-bidi-font-family: Arial;">Feng YQ, Desprat R, Fu H, Olivier E, Lin CM, Lobell A, Gowda SN, Aladjem MI, Bouhassira EE. (2006). <strong style="mso-bidi-font-weight: normal;">DNA methylation supports intrinsic epigenetic memory in mammalian cells. </strong></span><span style="mso-bidi-font-size: 11.0pt; mso-bidi-font-family: Arial;">PLoS Genet. </span><span lang="FR" style="mso-bidi-font-size: 11.0pt; mso-bidi-font-family: Arial; mso-ansi-language: FR;">2006 Epub 2006 Apr 28.</span> <span lang="FR" style="mso-bidi-font-size: 11.0pt; mso-bidi-font-family: Arial; mso-ansi-language: FR;">PMID: 16683039 <u>Cited by 75</u></span></p>
<p class="MsoNormal" style="margin-left: 13.5pt; text-indent: -.25in; mso-list: l4 level1 lfo1; mso-layout-grid-align: none; text-autospace: ideograph-numeric ideograph-other;"><!-- [if !supportLists]--><span style="mso-bidi-font-size: 11.0pt; mso-fareast-font-family: Arial; mso-bidi-font-family: Arial;"><span style="mso-list: Ignore;">3.<span style="font: 7.0pt 'Times New Roman';"> </span></span></span><!--[endif]--><span style="mso-bidi-font-family: Arial;">Pawliuk R., KA Westerman, ME Fabry, E Payen, R Tighe, EE Bouhassira, SA Acharya, J Ellis, IM London, CJ Eaves, RK Humphries, Y Beuzard, RL Nagel, P Leboulch<span style="mso-spacerun: yes;"> </span>(2001):<span style="mso-spacerun: yes;"> </span><strong>Correction of sickle cell disease in transgenic mouse models by gene therapy.</strong> </span><span style="mso-bidi-font-size: 11.0pt; mso-bidi-font-family: Arial;">Science<span style="mso-spacerun: yes;"> </span>294:2368-71. PMID: 11743206 <u>Cited by 574</u></span> </p>
<p class="MsoNormal" style="margin-left: 13.5pt; text-indent: -.25in; mso-list: l4 level1 lfo1; mso-layout-grid-align: none; text-autospace: ideograph-numeric ideograph-other;"><!-- [if !supportLists]--><span style="mso-bidi-font-size: 11.0pt; mso-fareast-font-family: Arial; mso-bidi-font-family: Arial;"><span style="mso-list: Ignore;">4.<span style="font: 7.0pt 'Times New Roman';"> </span></span></span><!--[endif]--><span style="mso-bidi-font-size: 11.0pt; mso-bidi-font-family: Arial;">Boulad F, Maggio A, Xiuyan Wang X, Moi P, Acuto S, Kogel F, Takpradit A, Prockop S, Mansilla-Soto J, Cabriolu A, Odak A. Thummar K, Du F, Shen L, Raso s, Barone R, Di Maggio R, Pitrolo L, Giambona A, Mingoia M, Everett JK, Hokama P, Roche A, Cantu A, Adhikari H, Reddy S, Bouhassira EE, Mohandas N, Bushman FD, Rivière I, Sadelain M (2001) <strong>Lentiviral globin gene therapy with reduced-intensity conditioning in adults with β-thalassemia: a phase 1 trial.<span style="mso-spacerun: yes;"> </span></strong></span><span style="font-family: Arial, sans-serif; font-size: 10.5pt;">Nat Med. 2022 Jan;28(1):63-70.</span></p>
<p class="MsoNormal" style="margin-left: 13.5pt; text-indent: -.25in; mso-list: l4 level1 lfo1; mso-layout-grid-align: none; text-autospace: ideograph-numeric ideograph-other;"><strong style="mso-bidi-font-weight: normal;"><span style="background: lightgrey; mso-highlight: lightgrey;">Development of Recombinase-Mediated Cassette Exchange and safe harbor concept</span></strong></p>
<p class="MsoNormal" style="text-align: justify; text-indent: .25in; text-autospace: ideograph-numeric ideograph-other;">Lentiviral transduction, stable transfection and transgenesis results in random integration of transgenes which leads to positive or negative position-effects. Position-effects greatly complicate gene therapy as well as the interpretation of most stable transfection or transduction experiments. To eliminate these problems, we have developed RMCE, a method that allows site-specific integration of cassettes at predetermined chromosomal locations in mammalian cells. We used the method extensively to better understand the molecular basis of position-effects in erythroid cells (see above). Many other labs, all over the world, have adopted RMCE, and adapted it to many cell types and many organisms. Over 500 studies that take advantage of RMCE have been published.</p>
<p class="MsoNormal" style="text-align: justify; text-autospace: ideograph-numeric ideograph-other;"><span style="mso-tab-count: 1;"> </span>The use of the RMCE led us to develop the concept of safe harbors as an efficient method to perform gene therapy safely and cost efficiently, without having to design and test novel vector or gene editing strategy for every mutation in every defective human gene. We demonstrated the concept by correcting alpha-thalassemia in iPSCs by targeting constructs to the AAVS1.</p>
<p class="MsoNormal" style="margin-left: .25in; text-indent: -.25in; mso-list: l0 level1 lfo2; mso-layout-grid-align: none;"><!-- [if !supportLists]--><span style="mso-bidi-font-size: 11.0pt; mso-fareast-font-family: Arial; mso-bidi-font-family: Arial;"><span style="mso-list: Ignore;">1.<span style="font: 7.0pt 'Times New Roman';"> </span></span></span><!--[endif]--><span style="mso-bidi-font-family: Arial;">Bouhassira EE., K Westerman, P Leboulch: (1997) <strong>Transcriptional Behavior Of LCR Elements Integrated At The Same Chromosomal Locus By RMCE.</strong> </span><span style="mso-bidi-font-size: 11.0pt; mso-bidi-font-family: Arial;">Blood, 90: 3332-3244.</span> <span style="mso-bidi-font-size: 11.0pt; mso-bidi-font-family: Arial;">PMID: 9345015 <u>Cited by 177</u></span></p>
<p class="MsoNormal" style="margin-left: .25in; text-indent: -.25in; mso-list: l0 level1 lfo2; mso-layout-grid-align: none;"><!-- [if !supportLists]--><span style="mso-bidi-font-size: 11.0pt; mso-fareast-font-family: Arial; mso-bidi-font-family: Arial;"><span style="mso-list: Ignore;">2.<span style="font: 7.0pt 'Times New Roman';"> </span></span></span><!--[endif]--><span style="mso-bidi-font-family: Arial;">Feng YQ, Seibler J, Alami R, Eisen A, Fiering SN, Bouhassira EE: (1999) <strong>Site-Specific Chromosomal Integration In Mammalian cells: Highly Efficient CRE Recombinase-Mediated Cassette Exchange.</strong> </span><span style="mso-bidi-font-size: 11.0pt; mso-bidi-font-family: Arial;">J. Mol. Biol. 292 (4): 779-785. PMID: 10525404 <u>Cited by 249</u></span></p>
<p class="MsoNormal" style="margin-left: .25in; text-indent: -.25in; mso-list: l0 level1 lfo2; mso-layout-grid-align: none;"><!-- [if !supportLists]--><span style="font-size: 9.0pt; mso-fareast-font-family: Arial; mso-bidi-font-family: Arial;"><span style="mso-list: Ignore;">3.<span style="font: 7.0pt 'Times New Roman';"> </span></span></span><!--[endif]--><span style="mso-bidi-font-family: Arial;">Chang CJ and Bouhassira EE. <strong style="mso-bidi-font-weight: normal;">Zinc-finger nuclease mediated correction of α-thalassemia in iPS cells</strong>. Blood. 2012; Nov 8;120(19):3906-14. PMID: 23002118 <u>Cited by 100</u></span></p>
<p class="MsoNormal" style="margin-left: .25in; text-indent: -.25in; mso-list: l0 level1 lfo2; mso-layout-grid-align: none;"><!-- [if !supportLists]--><strong style="mso-bidi-font-weight: normal;"><span style="background: lightgrey; mso-highlight: lightgrey;">Molecular basis of Thrombotic Thrombocytopenic Purpura</span></strong></p>
<p class="MsoNormal" style="text-autospace: ideograph-numeric ideograph-other;">In collaboration with Dr. Han-Mou Tsai we have demonstrated that ADAMTS13 is responsible for congenital TTP, that auto-antibody resistant forms of the protein could be generated, that ADMTS13 is expressed predominantly in stellate cells, and we have explored some of the molecular mechanisms associated with low levels of ADAMTS13 expression in human population.<span style="mso-spacerun: yes;"> </span></p>
<p class="MsoListParagraph" style="margin-left: 31.5pt; text-indent: -.25in; mso-list: l2 level1 lfo4; mso-layout-grid-align: none; text-autospace: ideograph-numeric ideograph-other;"><!-- [if !supportLists]--><span style="mso-bidi-font-size: 11.0pt; mso-fareast-font-family: Arial; mso-bidi-font-family: Arial;"><span style="mso-list: Ignore;">1.<span style="font: 7.0pt 'Times New Roman';"> </span></span></span><!--[endif]--><span style="mso-bidi-font-family: Arial;">Levy GG, Nichols WC, Lian EC, Foroud T, McClintick JN, McGee BM, Yang AY, Siemieniak DR, Stark KR, Gruppo R, Sarode R, Shurin SB, Chandrasekaran V, Stabler SP, Sabio H, Bouhassira EE, Upshaw JD Jr, Ginsburg D, Tsai HM. <strong style="mso-bidi-font-weight: normal;">Mutations in a member of the ADAMTS gene family cause thrombotic thrombocytopenic purpura. </strong></span><span style="mso-bidi-font-size: 11.0pt; mso-bidi-font-family: Arial;">Nature. 2001; 413(6855):488-94. PMID: 11586351. <u>Cited by 1683</u></span></p>
<p class="MsoListParagraph" style="margin-left: 31.5pt; text-indent: -.25in; mso-list: l2 level1 lfo4; mso-layout-grid-align: none; text-autospace: ideograph-numeric ideograph-other;"><!-- [if !supportLists]--><span style="mso-bidi-font-size: 11.0pt; mso-fareast-font-family: Arial; mso-bidi-font-family: Arial;"><span style="mso-list: Ignore;">2.<span style="font: 7.0pt 'Times New Roman';"> </span></span></span><!--[endif]--><span style="mso-bidi-font-family: Arial;">Zhou W, Dong L, Ginsburg D, Bouhassira EE, Tsai HM. <strong style="mso-bidi-font-weight: normal;">Enzymatically active ADAMTS13 variants are not inhibited by anti-ADAMTS13 autoantibodies: a novel therapeutic strategy?</strong> </span><span style="mso-bidi-font-size: 11.0pt; mso-bidi-font-family: Arial;">The Journal of biological chemistry. 2005; 280(48):39934-41. PMID: 16203734</span><span style="mso-bidi-font-size: 11.0pt;"> <span style="mso-spacerun: yes;"> </span></span><u><span style="mso-bidi-font-size: 11.0pt; mso-bidi-font-family: Arial;">Cited by 59</span></u><span style="mso-bidi-font-size: 11.0pt;"><span style="mso-spacerun: yes;"> </span></span></p>
<p class="MsoListParagraph" style="margin-left: 31.5pt; text-indent: -.25in; mso-list: l2 level1 lfo4; mso-layout-grid-align: none; text-autospace: ideograph-numeric ideograph-other;"><!-- [if !supportLists]--><span style="mso-bidi-font-size: 11.0pt; mso-fareast-font-family: Arial; mso-bidi-font-family: Arial;"><span style="mso-list: Ignore;">3.<span style="font: 7.0pt 'Times New Roman';"> </span></span></span><!--[endif]--><span style="mso-bidi-font-family: Arial;">Zhou W, Inada M, Lee TP, Benten D, Lyubsky S, Bouhassira EE, Gupta S, Tsai HM.<strong style="mso-bidi-font-weight: normal;"> ADAMTS13 is expressed in hepatic stellate cells. </strong>Laboratory investigation; </span><span style="mso-bidi-font-size: 11.0pt; mso-bidi-font-family: Arial;">a journal of technical methods and pathology. 2005; 85(6):780-8. PMID: 15806136<span style="mso-spacerun: yes;"> </span><u>Cited by 162</u></span><span style="mso-bidi-font-size: 11.0pt;"><span style="mso-spacerun: yes;"> </span></span></p>
<p class="MsoListParagraph" style="margin-left: 31.5pt; text-indent: -.25in; mso-list: l2 level1 lfo4; mso-layout-grid-align: none; text-autospace: ideograph-numeric ideograph-other;"><!-- [if !supportLists]--><span style="mso-bidi-font-size: 11.0pt; mso-fareast-font-family: Arial; mso-bidi-font-family: Arial;"><span style="mso-list: Ignore;">4.<span style="font: 7.0pt 'Times New Roman';"> </span></span></span><!--[endif]--><span lang="FR" style="mso-bidi-font-family: Arial; mso-ansi-language: FR;">Zhou W, Bouhassira EE, Tsai HM. </span><strong style="mso-bidi-font-weight: normal;"><span style="mso-bidi-font-family: Arial;">An IAP retrotransposon in the mouse ADAMTS13 gene creates ADAMTS13 variant proteins that are less effective in cleaving von Willebrand factor multimers.</span></strong> <span style="mso-bidi-font-size: 11.0pt; mso-bidi-font-family: Arial;">Blood. 2007; 110(3):886-93. PMID: 17426255<span style="mso-spacerun: yes;"> </span><u>Cited by 38</u></span></p>
<p class="MsoListParagraph" style="margin-left: 31.5pt; text-indent: -.25in; mso-list: l2 level1 lfo4; mso-layout-grid-align: none; text-autospace: ideograph-numeric ideograph-other;"><strong><span style="background: lightgrey;">Characterization of replication timing and replication origins in human primary erythroid cells</span></strong></p>
<p class="MsoNormal" style="text-align: justify; text-indent: 0.25in;">Gene transcription is regulated by transcription factors and by chromatin structure. Using the Recombinase-Mediated Cassette Exchange (RMCE) method and <span style="font-family: Symbol;">b</span>-globin transgenes as a model, we demonstrated that replication timing plays a critical role in gene expression at some genetic loci in erythroid cells. This prompted us to investigate the mechanisms that regulate replication timing in basophilic erythroblasts. In collaboration with the Schildkraut and Mieg labs, we developed the TimEX and TimEX-seq method to measure replication timing genome-wide using tiling micro-arrays and massively parallel sequencing. We applied these methods to generate genome-wide maps of replication timing in several cell types that demonstrated that replication timing is very tightly regulated in mammalian cells and that the timing of replication and gene expression levels are very closely linked. </p>
<p class="MsoNormal" style="margin-left: 4.5pt; text-align: justify; text-indent: 0.25in;">In collaboration with the Aladjem lab, we also developed methods to generate allele-specific profiles of replication timing and replication origins. Using these maps and a novel analytic approach, we show that the two chromosome homologs replicate within a few minutes of each other in about 92% of the genome but that about 8% of the genome replicate asynchronously. Asynchrony is associated with imprinting random mono-allelic expression and proximity to large structural variants. We also showed that an asymmetry in nucleotide distribution, which increases the propensity of origins to unwind and adopt non-B DNA structure, rather than the ability to form G4-quadruplexes, is directly associated with origin activity. This work also led to the development of GenPlay, a powerful, JAVA, open-source genome browser and analyzer application that is available online and currently utilized by over 100 labs worldwide.</p>
<p class="MsoListParagraph" style="margin-left: 0.25in; text-align: justify; text-indent: -0.25in;">1.<span style="font-variant-numeric: normal; font-variant-east-asian: normal; font-stretch: normal; font-size: 7pt; line-height: normal; font-family: 'Times New Roman';"> </span>Fu H., Lixin W., Lin CH, Singhania S, Bouhassira EE, Aladjem MI. <strong>Human Replicators Can Prevent Gene Silencing</strong>. Nature Biotech. 2006, 24(5):572-6. PMID: 16604060 <u>Cited by 37</u> </p>
<p class="MsoListParagraph" style="margin-left: 0.25in; text-align: justify; text-indent: -0.25in;">2.<span style="font-variant-numeric: normal; font-variant-east-asian: normal; font-stretch: normal; font-size: 7pt; line-height: normal; font-family: 'Times New Roman';"> </span>Desprat R, Thierry-Mieg D, Lailler N, Lajugie J, Schildkraut C, Thierry-Mieg J, Bouhassira EE. <strong>Predictable dynamic program of timing of DNA replication in human cells.</strong> Genome Research. 2009 Dec;19(12):2288-99. PMID: 19767418 <u>Cited by 117</u></p>
<p class="MsoListParagraph"><span style="text-align: justify; text-indent: -0.25in;">3.<span style="font-variant-numeric: normal; font-variant-east-asian: normal; font-stretch: normal; font-size: 7pt; line-height: normal; font-family: 'Times New Roman';"> </span></span><span style="text-align: justify; text-indent: -0.25in;">Mukhopadhyay R, Lajugie J, Fourel N, Selzer A, Schizas M, Bartholdy B, Mar J, Lin CM, Martin MM , Ryan M, Aladjem MI and Bouhassira EE. <strong>Allele-Specific Genome-wide Profiling in Human Primary Erythroblasts Reveal Replication Program Organization. </strong></span><span style="text-align: justify; text-indent: -0.25in;">PLoS Genet. 2014 May 1;10(5):e1004319. PMID: 24787348 <u>Cited by 42</u></span> </p>
<p class="MsoListParagraph" style="margin-left: 0.25in; text-align: justify; text-indent: -0.25in;">4.<span style="font-variant-numeric: normal; font-variant-east-asian: normal; font-stretch: normal; font-size: 7pt; line-height: normal; font-family: 'Times New Roman';"> </span>Bartholdy B, Mukhopadhyay R, Lajugie J, Aladjem MI, Bouhassira EE. <strong>Allele-specific analysis of DNA replication origins in mammalian cells.</strong> Nat Commun. 2015 May 19;6:7051. PMID: 25987481 <u>Cited by 32</u></p>